Mostrando entradas con la etiqueta biopieces. Mostrar todas las entradas
Mostrando entradas con la etiqueta biopieces. Mostrar todas las entradas

viernes, 23 de marzo de 2012

The quest to install Biopieces

This is my own experience installing Biopieces on Ubuntu 10.04 Lucid Lynx LTS.

sudo apt-get install subversion
sudo perl -MCPAN -e 'install inline'
sudo perl -MCPAN -e 'install JSON::XS'
sudo apt-get install curl
bash -s stable < <(curl -s https://raw.github.com/wayneeseguin/rvm/master/binscripts/rvm-installer)
source ~/.rvm/scripts/rvm
rvm install 1.9.3
sudo gem install rubygems-update
cd /var/lib/gems/1.9.1/bin
sudo ./update_rybygems
sudo gem install gnuplot
sudo apt-get install ruby1.9.3-dev
sudo gem install narray
sudo gem install RubyInline
sudo bash biopieces_install....sh

Warnings: blastall, blat, bwa, bowtie, formatdb, gnuplot, idba, mummer, mysql, prodigal, ray, scan_for_matches, usearch, velveth, velvetg, vmatch

Does biopieces deserve its own Linux distribution?